https://genereg.r-universe.devRecent package updates in generegR-universehttps://github.com/genereg.pnghttps://genereg.r-universe.devTue, 28 Apr 2026 12:38:20 GMTge_tan@live.com (Ge Tan)TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It can also scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software.https://github.com/r-universe/bioc/actions/runs/36542984760Tue, 28 Apr 2026 12:38:20 GMTTFBSTools1.51.0successhttps://bioc.r-universe.devhttps://github.com/bioc/TFBSToolsTFBSTools.RmdTFBSTools.htmlTranscription factor binding site (TFBS) analysis with the "TFBSTools" package2015-11-17 13:18:552025-03-12 16:25:58ge_tan@live.com (Ge Tan)Data package for JASPAR 2016. To search this databases, please use the package TFBSTools (>= 1.8.1).https://github.com/r-universe/bioc/actions/runs/38045278511Tue, 28 Apr 2026 12:28:54 GMTJASPAR20161.41.0successhttps://bioc.r-universe.devhttps://github.com/bioc/JASPAR2016ge_tan@live.com (Ge Tan)Data package for JASPAR 2014. To search this databases, please use the package TFBSTools.https://github.com/r-universe/bioc/actions/runs/39414132066Tue, 28 Apr 2026 12:26:20 GMTJASPAR20141.49.0successhttps://bioc.r-universe.devhttps://github.com/bioc/JASPAR2014ge_tan@live.com (Ge Tan)In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. <doi:10.1186/1748-7188-2-15>.https://github.com/r-universe/ge11232002/actions/runs/38863587311Sun, 18 Jan 2026 18:33:08 GMTTFMPvalue1.0.0successhttps://ge11232002.r-universe.devhttps://github.com/ge11232002/tfmpvalue